| 2014 | Characterization of negative regulatory genes for the biosynthesis of rapamycin in Streptomyces rapamycinicus and its application for improved production | 윤여준 | Article |
| 2019 | Characterization of the Ohmyungsamycin Biosynthetic Pathway and Generation of Derivatives with Improved Antituberculosis Activity | 윤여준; 송명종 | Article |
| 2016 | Characterization of the Two Methylation Steps Involved in the Biosynthesis of Mycinose in Tylosin | 윤여준; 송명종; 남상집 | Article |
| 2015 | Chemoenzymatic Synthesis of Glycosylated Macrolactam Analogues of the Macrolide Antibiotic YC-17 | 윤여준; Pramod B. Shinde | Article |
| 2013 | Combinatorial biosynthesis and antibacterial evaluation of glycosylated derivatives of 12-membered macrolide antibiotic YC-17 | 윤여준; Pramod B. Shinde | Article |
| 2008 | Combinatorial biosynthesis of 5-O-desosaminyl erythronolide A as a potent precursor of ketolide antibiotics | 윤여준 | Article |
| 2016 | Complete genome sequence of Streptomyces venezuelae ATCC 15439, a promising cell factory for production of secondary metabolites | 윤여준 | Editorial Material |
| 2019 | Complete reconstitution of the diverse pathways of gentamicin B biosynthesis | 윤여준; 송명종; 차선신; 반연희 | Article |
| 2006 | Degradation of clavulanic acid during the cultivation of Streptomyces clavuligerus; instability of clavulanic acid by metabolites and proteins from the strain | 윤여준 | Article |
| 2018 | Depsidomycins B and C: New cyclic peptides from a ginseng farm soil-derived actinomycete | 윤여준; 송명종 | Article |
| 2013 | Designed biosynthesis of 36-methyl-FK506 by polyketide precursor pathway engineering | 윤여준 | Article |
| 2015 | Developing Streptomyces venezuelae as a cell factory for the production of small molecules used in drug discovery | 윤여준 | Review |
| 2011 | Development of a Streptomyces venezuelae-based combinatorial biosynthetic system for the production of glycosylated derivatives of doxorubicin and its biosynthetic intermediates | 윤여준; 박제원 | Article |
| 2004 | Development of modified stokes expression to model the behavior of expanded beds containing polydisperse resins for protein adsorption | 윤여준 | Article |
| 2020 | Development of Non-Immunosuppressive FK506 Derivatives as Antifungal and Neurotrophic Agents | 윤여준 | Review |
| 2007 | Discovery and molecular engineering of sugar-containing natural product biosynthetic pathways in actinomycetes | 윤여준; 모상준 | Review |
| 2011 | Discovery of parallel pathways of kanamycin biosynthesis allows antibiotic manipulation | 윤여준 | Article |
| 2019 | Donghaesulfins A and B, Dimeric Benz[a]anthracene Thioethers from Volcanic Island Derived Streptomyces sp. | 윤여준; 반연희 | Article |
| 2005 | Efficient expression system to produce heterologous polyketides in streptomyces venezuelae. | 윤여준 | Meeting Abstract |
| 2017 | Enabling techniques in the search for new antibiotics: Combinatorial biosynthesis of sugar-containing antibiotics | 윤여준; 남상집 | Review |
| 2012 | Engineered biosynthesis of glycosylated derivatives of narbomycin and evaluation of their antibacterial activities | 윤여준; Pramod B. Shinde | Article |
| 2017 | Engineered biosynthesis of milbemycins in the avermectin high-producing strain Streptomyces avermitilis | 윤여준; 송명종; 남상집 | Article |
| 2009 | Engineering of plant-specific phenylpropanoids biosynthesis in Streptomyces venezuelae | 윤여준 | Article |
| 2018 | Enhanced Biosynthesis of 2-Deoxy-scyllo-inosose in Metabolically Engineered Bacillus subtilis Recombinants | 윤여준 | Article |
| 2009 | Enhanced FK506 production in Streptomyces clavuligerus CKD1119 by engineering the supply of methylmalonyl-CoA precursor | 윤여준; 박제원 | Article |
| 2011 | Enhanced flavonoid production in Streptomyces venezuelae via metabolic engineering | 윤여준 | Article |
| 2008 | Enhanced heterologous production of desosaminyl macrolides and their hydroxylated derivatives by overexpression of the pikD regulatory gene in Streptomyces Venezuelae | 윤여준 | Article |
| 2006 | Enhanced production of epothilones by carbon sources in Sorangium cellulosum | 윤여준 | Article |
| 2006 | Enhanced production of hydroxylated macrolides from the pikromycin pathway of Streptomyces venezuelae | 윤여준 | Article |
| 2005 | Enhanced production of manganese peroxidase from immobilized Phanerochaete chrysosporium due to the increased autolysis of chlamydospore-like cells | 윤여준 | Article |
