| 2013 | A hybrid zone between Bathymodiolus mussel lineages from eastern Pacific hydrothermal vents | 원용진 | Article |
| 2016 | A new species of yeti crab, genus Kiwa Macpherson, Jones and Segonzac, 2005 (Decapoda: Anomura: Kiwaidae), from a hydrothermal vent on the Australian-Antarctic Ridge | 원용진 | Article |
| 2018 | A new yeti crab phylogeny: Vent origins with indications of regional extinction in the East Pacific | 원용진 | Article |
| 2020 | A newly discovered Gigantidas bivalve mussel from the Onnuri Vent Field in the northern Central Indian Ridge | 원용진 | Article |
| 2008 | Absence of cospeciation between deep-sea mytilids and their thiotrophic endosymbionts | 원용진 | Article |
| 2009 | Application of molecular methods to identify food resources of short-eared owl (Asio flammeus) in wetland community | 이상돈; 원용진 | Article |
| 2019 | Bidirectional mitochondrial introgression between Korean cobitid fish mediated by hybridogenetic hybrids | 원용진 | Article |
| 2008 | Characterization of a T7-like lytic bacteriophage (φSG-JL2) of Salmonella enterica serovar gallinarum biovar gallinarum | 원용진 | Article |
| 2005 | Characterization of symbiont populations in life-history stages of mussels from chemosynthetic environments | 원용진 | Article |
| 2011 | Chemical constituents from the stony coral Alveopora japonica | 송준임; 서은경; 원용진; 한아름; 윤의중 | Article |
| 2016 | Cobitis nalbanti, a new species of spined loach from South Korea, and redescription of Cobitis lutheri (Teleostei: Cobitidae) | 원용진 | Article |
| 2016 | Complete mitochondrial genome of the headwater livebearer, Poeciliopsis monacha: the mother of clones | 원용진 | Article |
| 2016 | Complete mitochondrial genome of the hydrothermal vent tubeworm, Ridgeia piscesae (Polychaeta, siboglinidae) | 원용진 | Article |
| 2014 | Complete mitochondrial genome of the jellyfish, chrysaora quinquecirrha (cnidaria, scyphozoa) | 원용진 | Article |
| 2014 | Complete mitochondrial genome of the moon jellyfish, aurelia sp. nov. (cnidaria, scyphozoa) | 원용진 | Article |
| 2009 | Convergent and divergent patterns of morphological differentiation provide more evidence for reproductive character displacement in a wood cricket Gryllus fultoni (Orthoptera: Gryllidae) | 원용진; 최재천; 장이권 | Article |
| 2017 | Early life history of the eastern Korean Tetraploid Spined Loach, Iksookimia Yongdokensis (Pisces: Cobitidae) | 원용진 | Article |
| 2017 | Early life history of the eastern Korean tetraploid spined loach, lksookimia yongdokensis (Pisces: Cobitidae) | 원용진 | Article |
| 2018 | Effects of sea-level fluctuations and salinity on the demographic expansion and adaptive evolution of the mud-tidal gastropod (genus Batillaria) from the northwest Pacific | HO THI PHUONG THAO | Doctoral Thesis |
| 2012 | Estimation of divergence times in cnidarian evolution based on mitochondrial protein-coding genes and the fossil record | 송준임; 원용진 | Article |
| 2006 | Evolution of habitat use by deep-sea mussels | 원용진 | Article |
| 2018 | Exploring the Ecology of Deep-Sea Hydrothermal Vents in a Metacommunity Framework | 원용진 | Review |
| 2015 | First hydrothermal discoveries on the Australian-Antarctic Ridge: Discharge sites, plume chemistry, and vent organisms | 원용진 | Article |
| 2008 | Genetic characteristics of 207 microsatellite markers in the Korean population and in other Asian populations | 원용진 | Article |
| 2020 | Genetic patterns reveal northward range expansion and cryptic diversity in Nalbant's spined loach, Cobitis nalbanti sensu lato (Teleostei: Cypriniformes: Cobitidae) | 원용진 | Article |
| 2014 | Genomic replacement of native Cobitis lutheri with introduced C. tetralineata through a hybrid swarm following the artificial connection of river systems | 원용진 | Article |
| 2011 | Geographic variation in advertisement calls in a tree frog species: Gene flow and selection hypotheses | 원용진; 최재천; 장이권 | Article |
| 2017 | Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents | 원용진 | Article |
| 2013 | High genetic diversity within the morphologically conservative dwarf loach, Kichulchoia brevifasciata (Teleostei: Cobitidae), an endangered freshwater fish from South Korea | 원용진 | Article |
| 2013 | Identification of Cichlid Fishes from Lake Malawi Using Computer Vision | 원용진; 송종우 | Article |
