| 2015 | Data-driven drug discovery by chemical genomics approaches | 이해승 | Doctoral Thesis |
| 2015 | Development of computational methods for identifying cancer biomarkers from high-throughput data | 전유경 | Doctoral Thesis |
| 2013 | Development of web applications for fusion gene and post-GWAS analyses | 윤서연 | Doctoral Thesis |
| 2022 | Direct cell-to-cell transfer in stressed tumor microenvironment aggravates tumorigenic or metastatic potential in pancreatic cancer | 이상혁; 김재상; Charles Lee; 장기용; 이지은 | Article |
| 2012 | Discovery of ALK-PTPN3 gene fusion from human non-small cell lung carcinoma cell line using next generation RNA sequencing | 이상혁; 김재상; 정연주 | Article |
| 2006 | Down-regulation of Sox10 with specific small interfering RNA promotes transdifferentiation of Schwannoma cells into myofibroblasts | 이상혁; 김재상; 임진경 | Article |
| 2020 | Earlier-Phased Cancer Immunity Cycle Strongly Influences Cancer Immunity in Operable Never-Smoker Lung Adenocarcinoma | 이상혁; 정연주 | Article |
| 2007 | ECgene: An alternative splicing database update | 이상혁; 김재상 | Article |
| 2005 | ECgene: Genome annotation for alternative splicing | 이상혁 | Article |
| 2005 | ECgene: Genome-based EST clustering and gene modeling for alternative splicing | 이상혁 | Article |
| 2021 | Elucidating molecular mechanisms of acquired resistance to BRAF inhibitors in melanoma using a microfluidic device and deep sequencing | 이상혁; 정연주 | Article |
| 2015 | EMSAR: estimation of transcript abundance from RNA-seq data by mappability-based segmentation and reclustering | 이상혁 | Article |
| 2021 | FCN3 functions as a tumor suppressor of lung adenocarcinoma through induction of endoplasmic reticulum stress | 이상혁; 김재상; 정연주 | Article |
| 2022 | Fluid Shear Stress Regulates the Landscape of microRNAs in Endothelial Cell‐Derived Small Extracellular Vesicles and Modulates the Function of Endothelial Cells | 이상혁; 권기환 | Article |
| 2016 | Frequent CTLA4-CD28 gene fusion in diverse types of T-cell lymphoma | 이상혁; 김재상 | Article |
| 2020 | Fusion gene and toxicity analyses based on NGS transcriptomic data | 장예은 | Doctoral Thesis |
| 2019 | Fusionscan: Accurate prediction of fusion genes from RNA-seq data | 이상혁 | Article |
| 2011 | Garnet - gene set analysis with exploration of annotation relations | 이상혁; 김완규 | Article |
| 2017 | GEMICCL | 정인혜 | Master's Thesis |
| 2018 | GEMiCCL: mining genotype and expression data of cancer cell lines with elaborate visualization | 이상혁 | Article |
| 2021 | Genome-scale CRISPR screening identifies cell cycle and protein ubiquitination processes as druggable targets for erlotinib-resistant lung cancer | 이상혁; 김재상; Charles Lee; 장기용; 이지은 | Article |
| 2020 | Genome-scale screening of deubiquitinase subfamily identifies USP3 as a stabilizer of Cdc25A regulating cell cycle in cancer | 이상혁; 김재상 | Article |
| 2013 | GEPdb | 류다은 | Master's Thesis |
| 2014 | GEPdb: A database for investigating the ternary association of genotype, gene expression and phenotype | 이상혁; 김완규 | Article |
| 2020 | Glutathione peroxidase-1 regulates adhesion and metastasis of triple-negative breast cancer cells via FAK signaling | 이상혁; 강상원 | Article |
| 2012 | GoBean: A Java GUI application for visual exploration of GO term enrichments | 이상혁 | Article |
| 2014 | GsGator: An integrated web platform for cross-species gene set analysis | 이상혁; 김완규 | Article |
| 2022 | Heat shock protein 60 couples an oxidative stress-responsive p38/MK2 signaling and NF-κB survival machinery in cancer cells | 이상혁; 강상원; 강동민; 민성춘 | Article |
| 2012 | hiPathDB: A human-integrated pathway database with facile visualization | 이상혁; 김완규 | Article |
| 2019 | Human cytomegalovirus induces and exploits Roquin to counteract the IRF1-mediated antiviral state | 이상혁 | Article |
