View : 24 Download: 0

GoBean: A Java GUI application for visual exploration of GO term enrichments

Title
GoBean: A Java GUI application for visual exploration of GO term enrichments
Authors
Lee S.Cha J.-Y.Kim H.Yu U.
Ewha Authors
이상혁
SCOPUS Author ID
이상혁scopus
Issue Date
2012
Journal Title
BMB Reports
ISSN
1976-6696JCR Link
Citation
vol. 45, no. 2, pp. 120 - 125
Indexed
SCIE; SCOPUS; KCI WOS scopus
Abstract
We have developed a biologist-friendly, Java GUI application (GoBean) for GO term enrichment analysis. It was designed to be a comprehensive and flexible GUI tool for GO term enrichment analysis, combining the merits of other programs and incorporating extensive graphic exploration of enrichment results. An intuitive user interface with multiple panels allows for extensive visual scrutiny of analysis results. The program includes many essential and useful features, such as enrichment analysis algorithms, multiple test correction methods, and versatile filtering of enriched GO terms for more focused analyses. A unique graphic interface reflecting the GO tree structure was devised to facilitate comparisons of multiple GO analysis results, which can provide valuable insights for biological interpretation. Additional features to enhance user convenience include built in ID conversion, evidence code-based gene-GO association filtering, set operations of gene lists and enriched GO terms, and user -provided data files. It is available at http://neon.gachon.ac.kr/GoBean/.
DOI
10.5483/BMBRep.2012.45.2.120
Appears in Collections:
자연과학대학 > 생명과학전공 > Journal papers
Files in This Item:
There are no files associated with this item.
Export
RIS (EndNote)
XLS (Excel)
XML


qrcode

Items in DSpace are protected by copyright, with all rights reserved, unless otherwise indicated.

BROWSE