Urine-Based Noninvasive Detection of Prostate Cancer Using Human Olfactory Receptor-Embedded Nanodiscs

Abstract

The diagnosis of prostate cancer (PCa) is limited by the low specificity of prostate-specific antigen (PSA) testing, which contributes to overdiagnosis and patient exposure to unnecessary invasive prostate biopsies. Here, we report a urine-based diagnostic platform that combines a six-member human olfactory receptor-embedded nanodisc (OR-ND) sensor array with fluorescence sensing and machine learning to detect PCa-associated volatile organic compounds (VOCs). Six ORs were reconstituted into lipid nanodiscs and evaluated using urine samples from a strictly curated subcohort of 40 PCa patients and 33 healthy controls (n = 73) to establish baseline sensor responsiveness. Subsequently, to ensure diagnostic robustness, machine learning classifiers were developed and cross-validated using an expanded data set of 290 samples, achieving an accuracy of 0.890 and an AUC of 0.964. Analysis of the full receptor data set revealed distinct response patterns, and statistical screening with correlation filtering identified OR2W1, OR51E1, and OR51E2 as the most informative features. Using these selected receptors, a random forest classifier achieved an accuracy of 0.890 and an AUC of 0.964, demonstrating high sensitivity and specificity. OR response patterns showed a closer association with Gleason score than with serum PSA levels, indicating that urinary VOC signatures capture tumor-related metabolic information complementary to conventional biomarkers. These results demonstrate that an OR-ND sensor array coupled with machine learning enables accurate and noninvasive detection and classification of PCa from urine samples. Our study provides a modular framework extensible to other VOC-associated diseases.