| 2013 | High genetic diversity within the morphologically conservative dwarf loach, Kichulchoia brevifasciata (Teleostei: Cobitidae), an endangered freshwater fish from South Korea | 원용진 | Article |
| 2013 | Identification of Cichlid Fishes from Lake Malawi Using Computer Vision | 원용진; 송종우 | Article |
| 2017 | Impact of human activities on changes of ichthyofauna in Dongjin River of Korea in the past 30 years | 원용진 | Article |
| 2019 | Impacts of Salt Stress on Locomotor and Transcriptomic Responses in the Intertidal Gastropod Batillaria attramentaria | 원용진; 박중기 | Article |
| 2012 | Korea Barcode of Life Database System (KBOL) | 송준임; 원용진; 정종우 | Article |
| 2021 | Locomotor responses to salt stress in native and invasive mud-tidal gastropod populations (Batillaria) | 원용진; Elizabeth Mary Anna Hassell | Article |
| 2015 | Molecular phylogenetic and population genetic studies of the freshwater fish family Cobitidae (Teleostei: Cypriniformes) in Korea | 권예슬 | Doctoral Thesis |
| 2016 | Molecular phylogeny and biogeography of the crab family Kiwaidae (Decapoda: Anomura) from chemosynthetic deep-sea environments | 이원경 | Master's Thesis |
| 2017 | Morphological Variation and Population Genetic Structure of the Nalbant's Spined Loach, Cobitis nalbanti | 전연선 | Master's Thesis |
| 2018 | Multi-locus phylogenetic analyses support the monophyly and the Miocene diversification of Iksookimia (Teleostei: Cypriniformes: Cobitidae) | 원용진 | Article |
| 2017 | Multiple modes of positive selection shaping the patterns of incomplete selective sweeps over african populations of drosophila melanogaster | 원용진; 김유섭 | Article |
| 2006 | Nuclear gene variation and molecular dating of the cichlid species flock of Lake Malawi | 원용진 | Article |
| 2005 | On the origin of Lake Malawi cichlid species: A population genetic analysis of divergence | 원용진 | Conference Paper |
| 2012 | Permanent genetic resources added to molecular ecology resources database 1 August 2011-30 September 2011 | 원용진 | Note |
| 2011 | Permanent Genetic Resources added to Molecular Ecology Resources Database 1 December 2010-31 January 2011 | 원용진 | Article |
| 2010 | Permanent Genetic Resources added to Molecular Ecology Resources Database 1 October 2009-30 November 2009 | 원용진 | Article |
| 2024 | Population genetic structure of two sister loach species (Iksookima hugowolfeldi and I. longicorpa): paleo-drainage systems, river capture, and distribution of them. | 최다송 | Master's Thesis |
| 2009 | Population structure and genetic evidence for population expansion of the sweet smelt (Plecoglossus altivelis) in East Asia | 송혜경 | Master's Thesis |
| 2016 | Population subdivision of hydrothermal vent polychaete Alvinella pompejana across equatorial and Easter Microplate boundaries | 원용진 | Article |
| 2015 | Postglacial range shift and demographic expansion of the marine intertidal snail Batillaria attramentaria | 원용진 | Article |
| 2015 | rpoB gene sequencing for phylogenetic analysis of avian pathogenic Escherichia coli | 원용진 | Article |
| 2017 | Small fishes crossed a large mountain range: Quaternary stream capture events and freshwater fishes on both sides of the Taebaek Mountains | 원용진 | Article |
| 2011 | The complete mitochondrial genome of Calicogorgia granulosa (Anthozoa: Octocorallia): Potential gene novelty in unidentified ORFs formed by repeat expansion and segmental duplication | 송준임; 원용진 | Article |
| 2023 | The Genetic Connectivity of the Deep-sea Snail Phymorhynchus sp. Along the Hydrothermal Vents in Central Indian Ridge | 조수연 | Master's Thesis |
| 2024 | The Impact of Ancient Connectivity of the Korean Peninsula and Japanese Archipelago on the Present Genetic Relationships of Spined Loaches (Family: Cobitidae) | 허지원 | Master's Thesis |
| 2021 | The Population Genetic Structure of Korean Endemic Freshwater Fish, Cobitis hankugensis (Pisces: Cobitidae) | 명라연 | Master's Thesis |
| 2011 | The study of mitochondrial genome of Alcyonacea (Cnidaria: Anthozoa) | 박은지 | Master's Thesis |
| 2023 | Transcriptomic response to salinity variation in native and introduced mud-tidal gastropod <i>Batillaria attramentaria</i> | 원용진 | Article |
| 2014 | 동태평양 심해 열수구에 서식하는 Alvinella pompejana (Annelida: Polycheata)에 관한 집단 유전학적 분석 | 장숙진 | Master's Thesis |
| 2011 | 북미대륙 귀뚜라미 2종(Gryllus fultoni, Gryllus vernalis)에 대한 microsatellite 마커 개발과 집단 유전학적 분석 및 형질 대치 현상의 검토 | 이현정 | Master's Thesis |
