| 2022 | Divergent paths in the evolutionary history of maternally transmitted clam symbionts | 원용진 | Article |
| 2017 | Early life history of the eastern Korean Tetraploid Spined Loach, Iksookimia Yongdokensis (Pisces: Cobitidae) | 원용진 | Article |
| 2017 | Early life history of the eastern Korean tetraploid spined loach, lksookimia yongdokensis (Pisces: Cobitidae) | 원용진 | Article |
| 2018 | Effects of sea-level fluctuations and salinity on the demographic expansion and adaptive evolution of the mud-tidal gastropod (genus Batillaria) from the northwest Pacific | HO THI PHUONG THAO | Doctoral Thesis |
| 2012 | Estimation of divergence times in cnidarian evolution based on mitochondrial protein-coding genes and the fossil record | 송준임; 원용진 | Article |
| 2006 | Evolution of habitat use by deep-sea mussels | 원용진 | Article |
| 2018 | Exploring the Ecology of Deep-Sea Hydrothermal Vents in a Metacommunity Framework | 원용진 | Review |
| 2015 | First hydrothermal discoveries on the Australian-Antarctic Ridge: Discharge sites, plume chemistry, and vent organisms | 원용진 | Article |
| 2008 | Genetic characteristics of 207 microsatellite markers in the Korean population and in other Asian populations | 원용진 | Article |
| 2020 | Genetic diversity and connectivity of deep-sea hydrothermal vent populations of endemic species along the Eastern Pacific Rise and Central Indian Ridge | 장숙진 | Doctoral Thesis |
| 2020 | Genetic patterns reveal northward range expansion and cryptic diversity in Nalbant's spined loach, Cobitis nalbanti sensu lato (Teleostei: Cypriniformes: Cobitidae) | 원용진 | Article |
| 2023 | Genome assembly of the Korean intertidal mud-creeper <i>Batillaria attramentaria</i> | 원용진; 김유섭 | Article; Data Paper |
| 2014 | Genomic replacement of native Cobitis lutheri with introduced C. tetralineata through a hybrid swarm following the artificial connection of river systems | 원용진 | Article |
| 2011 | Geographic variation in advertisement calls in a tree frog species: Gene flow and selection hypotheses | 원용진; 최재천; 장이권 | Article |
| 2017 | Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents | 원용진 | Article |
| 2023 | Geographical subdivision of Alviniconcha snail populations in the Indian Ocean hydrothermal vent regions | 원용진 | Article |
| 2013 | High genetic diversity within the morphologically conservative dwarf loach, Kichulchoia brevifasciata (Teleostei: Cobitidae), an endangered freshwater fish from South Korea | 원용진 | Article |
| 2013 | Identification of Cichlid Fishes from Lake Malawi Using Computer Vision | 원용진; 송종우 | Article |
| 2017 | Impact of human activities on changes of ichthyofauna in Dongjin River of Korea in the past 30 years | 원용진 | Article |
| 2019 | Impacts of Salt Stress on Locomotor and Transcriptomic Responses in the Intertidal Gastropod Batillaria attramentaria | 원용진; 박중기 | Article |
| 2012 | Korea Barcode of Life Database System (KBOL) | 송준임; 원용진; 정종우 | Article |
| 2021 | Locomotor responses to salt stress in native and invasive mud-tidal gastropod populations (Batillaria) | 원용진; Elizabeth Mary Anna Hassell | Article |
| 2015 | Molecular phylogenetic and population genetic studies of the freshwater fish family Cobitidae (Teleostei: Cypriniformes) in Korea | 권예슬 | Doctoral Thesis |
| 2016 | Molecular phylogeny and biogeography of the crab family Kiwaidae (Decapoda: Anomura) from chemosynthetic deep-sea environments | 이원경 | Master's Thesis |
| 2017 | Morphological Variation and Population Genetic Structure of the Nalbant's Spined Loach, Cobitis nalbanti | 전연선 | Master's Thesis |
| 2018 | Multi-locus phylogenetic analyses support the monophyly and the Miocene diversification of Iksookimia (Teleostei: Cypriniformes: Cobitidae) | 원용진 | Article |
| 2017 | Multiple modes of positive selection shaping the patterns of incomplete selective sweeps over african populations of drosophila melanogaster | 원용진; 김유섭 | Article |
| 2006 | Nuclear gene variation and molecular dating of the cichlid species flock of Lake Malawi | 원용진 | Article |
| 2005 | On the origin of Lake Malawi cichlid species: A population genetic analysis of divergence | 원용진 | Conference Paper |
| 2012 | Permanent genetic resources added to molecular ecology resources database 1 August 2011-30 September 2011 | 원용진 | Note |
