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Efficient isolation method for high-quality genomic DNA from cicada exuviae
- Efficient isolation method for high-quality genomic DNA from cicada exuviae
- Nguyen H.Q.; Kim Y.I.; Borzée A.; Jang Y.
- Ewha Authors
- SCOPUS Author ID
- Issue Date
- Journal Title
- Ecology and Evolution
- vol. 7, no. 20, pp. 8161 - 8169
- cicada exoskeleton; Crytptotympana atrata; exuviae; noninvasive DNA sampling
- SCIE; SCOPUS
- In recent years, animal ethics issues have led researchers to explore nondestructive methods to access materials for genetic studies. Cicada exuviae are among those materials because they are cast skins that individuals left after molt and are easily collected. In this study, we aim to identify the most efficient extraction method to obtain high quantity and quality of DNA from cicada exuviae. We compared relative DNA yield and purity of six extraction protocols, including both manual protocols and available commercial kits, extracting from four different exoskeleton parts. Furthermore, amplification and sequencing of genomic DNA were evaluated in terms of availability of sequencing sequence at the expected genomic size. Both the choice of protocol and exuvia part significantly affected DNA yield and purity. Only samples that were extracted using the PowerSoil DNA Isolation kit generated gel bands of expected size as well as successful sequencing results. The failed attempts to extract DNA using other protocols could be partially explained by a low DNA yield from cicada exuviae and partly by contamination with humic acids that exist in the soil where cicada nymphs reside before emergence, as shown by spectroscopic measurements. Genomic DNA extracted from cicada exuviae could provide valuable information for species identification, allowing the investigation of genetic diversity across consecutive broods, or spatiotemporal variation among various populations. Consequently, we hope to provide a simple method to acquire pure genomic DNA applicable for multiple research purposes. © 2017 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.
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