Full metadata record
DC Field | Value | Language |
---|---|---|
dc.contributor.author | 이민수 | * |
dc.date.accessioned | 2016-09-21T01:09:20Z | - |
dc.date.available | 2016-09-21T01:09:20Z | - |
dc.date.issued | 2016 | * |
dc.identifier.issn | 1367-4803 | * |
dc.identifier.issn | 1460-2059 | * |
dc.identifier.other | OAK-19252 | * |
dc.identifier.uri | https://dspace.ewha.ac.kr/handle/2015.oak/232284 | - |
dc.description.abstract | MGEScan-long terminal repeat (LTR) and MGEScan-non-LTR are successfully used programs for identifying LTRs and non-LTR retrotransposons in eukaryotic genome sequences. However, these programs are not supported by easy-to-use interfaces nor well suited for data visualization in general data formats. Here, we present MGEScan, a user-friendly system that combines these two programs with a Galaxy workflow system accelerated with MPI and Python threading on compute clusters. MGEScan and Galaxy empower researchers to identify transposable elements in a graphical user interface with ready-to-use workflows. MGEScan also visualizes the custom annotation tracks for mobile genetic elements in public genome browsers. A maximum speed-up of 3.26x is attained for execution time using concurrent processing and MPI on four virtual cores. MGEScan provides four operational modes: as a command line tool, as a Galaxy Toolshed, on a Galaxy-based web server, and on a virtual cluster on the Amazon cloud. | * |
dc.language | English | * |
dc.publisher | OXFORD UNIV PRESS | * |
dc.title | MGEScan: a Galaxy-based system for identifying retrotransposons in genomes | * |
dc.type | Article | * |
dc.relation.issue | 16 | * |
dc.relation.volume | 32 | * |
dc.relation.index | SCIE | * |
dc.relation.index | SCOPUS | * |
dc.relation.startpage | 2502 | * |
dc.relation.lastpage | 2504 | * |
dc.relation.journaltitle | BIOINFORMATICS | * |
dc.identifier.doi | 10.1093/bioinformatics/btw157 | * |
dc.identifier.wosid | WOS:000383682900014 | * |
dc.identifier.scopusid | 2-s2.0-84983266553 | * |
dc.author.google | Lee, Hyungro | * |
dc.author.google | Lee, Minsu | * |
dc.author.google | Ismail, Wazim Mohammed | * |
dc.author.google | Rho, Mina | * |
dc.author.google | Fox, Geoffrey C. | * |
dc.author.google | Oh, Sangyoon | * |
dc.author.google | Tang, Haixu | * |
dc.contributor.scopusid | 이민수(56142596700) | * |
dc.date.modifydate | 20240322133738 | * |