| 2023 | BEAR: A Novel Virtual Screening Method Based on Large-Scale Bioactivity Data | 이화정; 김완규; 이재옥 | Article |
| 2019 | CDRgator: An Integrative Navigator of Cancer Drug Resistance Gene Signatures | 김완규 | Article |
| 2021 | Circulating Small Extracellular Vesicles Activate TYRO3 to Drive Cancer Metastasis and Chemoresistance | 김완규 | Article |
| 2011 | Clinical validation of colorectal cancer biomarkers identified from bioinformatics analysis of public expression data | 이상혁; 김재상; 김완규; 정연주 | Article |
| 2019 | Comparison of Target Features for Predicting Drug-Target Interactions by Deep Neural Network Based on Large-Scale Drug-Induced Transcriptome Data | 김완규 | Article |
| 2021 | Comprehensive Survey of Recent Drug Discovery Using Deep Learning | 김완규; 민동보 | Review |
| 2023 | Computational drug discovery using drug-induced transcriptome data | 이한비 | Doctoral Thesis |
| 2020 | Connectivity map-based drug repositioning of bortezomib to reverse the metastatic effect of GALNT14 in lung cancer | 김완규 | Article |
| 2021 | Correction to: Connectivity map-based drug repositioning of bortezomib to reverse the metastatic effect of GALNT14 in lung cancer (Oncogene, (2020), 39, 23, (4567-4580), 10.1038/s41388-020-1316-2) | 김완규 | Erratum |
| 2021 | Crosstalk between YAP and TGF beta regulates SERPINE1 expression in mesenchymal lung cancer cells | 김완규 | Article |
| 2019 | CSgator: an integrated web platform for compound set analysis | 김완규 | Article |
| 2015 | Data-driven drug discovery by chemical genomics approaches | 이해승 | Doctoral Thesis |
| 2015 | Development of computational methods for identifying cancer biomarkers from high-throughput data | 전유경 | Doctoral Thesis |
| 2013 | Development of web applications for fusion gene and post-GWAS analyses | 윤서연 | Doctoral Thesis |
| 2022 | Discovery of dipeptidyl peptidase-4 inhibitor specific biomarker in non-alcoholic fatty liver disease mouse models using modified basket trial | 김완규 | Article |
| 2012 | Dissection of the dimerization modes in the DJ-1 superfamily | 김완규 | Article |
| 2016 | Drug repositioning for cancer therapy based on large-scale drug-induced transcriptional signatures | 김완규 | Article |
| 2021 | Enhanced Sensitivity of Nonsmall Cell Lung Cancer with Acquired Resistance to Epidermal Growth Factor Receptor-Tyrosine Kinase Inhibitors to Phenformin: The Roles of a Metabolic Shift to Oxidative Phosphorylation and Redox Balance | 김완규 | Article |
| 2014 | Exome and transcriptome profiling of lung adenocarcinoma in female never-smokers | 김재상; 김완규; 정연주 | Meeting Abstract |
| 2011 | Garnet - gene set analysis with exploration of annotation relations | 이상혁; 김완규 | Article |
| 2013 | GEPdb | 류다은 | Master's Thesis |
| 2014 | GEPdb: A database for investigating the ternary association of genotype, gene expression and phenotype | 이상혁; 김완규 | Article |
| 2014 | GsGator: An integrated web platform for cross-species gene set analysis | 이상혁; 김완규 | Article |
| 2012 | hiPathDB: A human-integrated pathway database with facile visualization | 이상혁; 김완규 | Article |
| 2018 | Hsa-miR-10a-5p downregulation in mutant UQCRB-expressing cells promotes the cholesterol biosynthesis pathway | 김완규 | Article |
| 2020 | Identification of MYC as an antinecroptotic protein that stifles RIPK1-RIPK3 complex formation | 김완규 | Article |
| 2013 | Identification of upstream regulators for prognostic expression signature genes in colorectal cancer | 김완규 | Article |
| 2019 | In silico drug repositioning: from large-scale transcriptome data to therapeutics | 김완규; 이해승 | Review |
| 2020 | In silico prediction of phenotypic screening targets from large-scale bioassay data | 박세라 | Doctoral Thesis |
| 2019 | Inference of cancer biomarkers from transcriptome sequencing data | 유남희 | Doctoral Thesis |
