| 2013 | A hybrid zone between Bathymodiolus mussel lineages from eastern Pacific hydrothermal vents | 원용진 | Article |
| 2016 | A new species of yeti crab, genus Kiwa Macpherson, Jones and Segonzac, 2005 (Decapoda: Anomura: Kiwaidae), from a hydrothermal vent on the Australian-Antarctic Ridge | 원용진 | Article |
| 2022 | A regulatory hydrogenase gene cluster observed in the thioautotrophic symbiont of Bathymodiolus mussel in the East Pacific Rise | 원용진 | Article |
| 2008 | Absence of cospeciation between deep-sea mytilids and their thiotrophic endosymbionts | 원용진 | Article |
| 2022 | Anthropogenic habitat interconnection provokes homogenization of allopatric freshwater fish: concordance of genetic and phenotypic evidence | 원용진 | Article |
| 2009 | Application of molecular methods to identify food resources of short-eared owl (Asio flammeus) in wetland community | 이상돈; 원용진 | Article |
| 2008 | Characterization of a T7-like lytic bacteriophage (φSG-JL2) of Salmonella enterica serovar gallinarum biovar gallinarum | 원용진 | Article |
| 2005 | Characterization of symbiont populations in life-history stages of mussels from chemosynthetic environments | 원용진 | Article |
| 2011 | Chemical constituents from the stony coral Alveopora japonica | 송준임; 서은경; 원용진; 한아름; 윤의중 | Article |
| 2016 | Cobitis nalbanti, a new species of spined loach from South Korea, and redescription of Cobitis lutheri (Teleostei: Cobitidae) | 원용진 | Article |
| 2016 | Complete mitochondrial genome of the hydrothermal vent tubeworm, Ridgeia piscesae (Polychaeta, siboglinidae) | 원용진 | Article |
| 2014 | Complete mitochondrial genome of the jellyfish, chrysaora quinquecirrha (cnidaria, scyphozoa) | 원용진 | Article |
| 2014 | Complete mitochondrial genome of the moon jellyfish, aurelia sp. nov. (cnidaria, scyphozoa) | 원용진 | Article |
| 2009 | Convergent and divergent patterns of morphological differentiation provide more evidence for reproductive character displacement in a wood cricket Gryllus fultoni (Orthoptera: Gryllidae) | 원용진; 최재천; 장이권 | Article |
| 2022 | Divergent paths in the evolutionary history of maternally transmitted clam symbionts | 원용진 | Article |
| 2017 | Early life history of the eastern Korean Tetraploid Spined Loach, Iksookimia Yongdokensis (Pisces: Cobitidae) | 원용진 | Article |
| 2012 | Estimation of divergence times in cnidarian evolution based on mitochondrial protein-coding genes and the fossil record | 송준임; 원용진 | Article |
| 2006 | Evolution of habitat use by deep-sea mussels | 원용진 | Article |
| 2008 | Genetic characteristics of 207 microsatellite markers in the Korean population and in other Asian populations | 원용진 | Article |
| 2014 | Genomic replacement of native Cobitis lutheri with introduced C. tetralineata through a hybrid swarm following the artificial connection of river systems | 원용진 | Article |
| 2011 | Geographic variation in advertisement calls in a tree frog species: Gene flow and selection hypotheses | 원용진; 최재천; 장이권 | Article |
| 2017 | Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents | 원용진 | Article |
| 2013 | High genetic diversity within the morphologically conservative dwarf loach, Kichulchoia brevifasciata (Teleostei: Cobitidae), an endangered freshwater fish from South Korea | 원용진 | Article |
| 2013 | Identification of Cichlid Fishes from Lake Malawi Using Computer Vision | 원용진; 송종우 | Article |
| 2012 | Korea Barcode of Life Database System (KBOL) | 송준임; 원용진; 정종우 | Article |
| 2018 | Multi-locus phylogenetic analyses support the monophyly and the Miocene diversification of Iksookimia (Teleostei: Cypriniformes: Cobitidae) | 원용진 | Article |
| 2017 | Multiple modes of positive selection shaping the patterns of incomplete selective sweeps over african populations of drosophila melanogaster | 원용진; 김유섭 | Article |
| 2006 | Nuclear gene variation and molecular dating of the cichlid species flock of Lake Malawi | 원용진 | Article |
| 2005 | On the origin of Lake Malawi cichlid species: A population genetic analysis of divergence | 원용진 | Conference Paper |
| 2012 | Permanent genetic resources added to molecular ecology resources database 1 August 2011-30 September 2011 | 원용진 | Note |
